After Kaito and Shark battle Shadow, a truth about the Numbers War is revealed, while it is also discovered that Yuma's friend Astral came to destroy the world and that Dr. Faker is not dead after all.

Marik, with the help of Bakura, kidnaps Joey and Téa. The Rare Hunters also kidnap Mokuba to force Yugi and Kaiba to take on tag team duelists Umbra and Lumis on top of a skyscraper. The losers will be sent plummeting into the Shadow Realm.

The Pharaoh calls forth the mighty Egyptian God Slifer the Sky Dragon to fight the bandit Bakura's Diabound, but when Diabound starts attacking the townspeople, the Pharaoh must protect them, even if it means sacrificing himself!

The Pegasus Saga comes to an end, but a new journey is about to begin! Yugi meets a mysterious Egyptian named Shadi who enters Yugi's mind with the Millennium Key. What are these Millennium Items, and do they hold the answer to the mystery behind the Shadow Games?

The spirit of the Millennium Puzzle realizes that his memories of ancient Egypt have faded, but Téa helps him uncover the mysteries of his past.

Big 4 Nezbitt challenges Duke, Tristan, and Serenity for the right to gain control of three bodies at once! Will Serenity's errors cost her team the ultimate price when Tristan and Duke can't cover for her mistakes?

Joey squares off against the judicial jerk Big 3 Johnson who takes the Deck Master form of Judge Man! How can Joey defeat a foe who can destroy Joey's monsters at will?

Marik transforms The Winged Dragon of Ra into its powerful form, the Egyptian God Phoenix! If Joey can't withstand the Phoenix's blazing fire, he'll lose the duel... plus his only chance to save Mai from her mental prison!

Yugi and friends take a break from honing their card-playing skills to watch Weevil and Rex Raptor compete in the Duel Monsters Regional Championship. When Yugi opens a package from Duel Monsters creator, Maximillion Pegasus, Yugi is forced to face him in the mysterious Shadow Realm, where all the monsters and magic are real.

Kaiba returns to Duelist Kingdom for a showdown against Pegasus! Will Kaiba discover the secret behind Pegasus's strategies before he loses his soul, just like he did on his first trip to Duelist Kingdom?